Showing posts with label ViBRANT. Show all posts
Showing posts with label ViBRANT. Show all posts

Thursday, 1 August 2013

Informatics Horizons: Scratchpads & Citizen Science

This is the first of my talks from the Informatics Horizons event at the Natural History Museum, London covering some work we have been on linking Scratchpads and Citizen Science. The video of the talk is on YouTube:


... and the slides are on SlideShare:



The talk summarises what we have done with citizen science in Scratchpads so far, particularly the following projects and events:
The project to create a mobile app for recording observational data in Scratchpads is in collaboration with anymals+plants.

An example of an automated feed from user designed hardware might be along these lines: Open Source Data Logger.

Thursday, 21 February 2013

ViBRANT Citizen Science Workshop Report

The report from the workshop is now available to the public through Google Drive:

ViBRANT Citizen Science Workshop Report

It seems that we will be breaking free of the case study mentality and looking to build a generic system for biological citizen science.... follow our progress.

Wednesday, 13 February 2013

Presentations from ViBRANT Cirtizen Science Workshop

The presentations from the ViBRANT Citizen Science Workshop:

Intro


COMBER


iSpot


ExCiteS

The same talk a few days earlier at UCL.

Citizen Sciecne at the Natural History Museum, London



Global Canopy Project


Overview of EU Projects


Thursday, 22 November 2012

ViBRANT Citizen Science Workshop (24-25 January 2013)

Organised by Ed Baker (me) & Sarah Faulwetter to set a framework for future development of the Scratchpads BioBlitz profile (demo site) and the HCMR's ViBRANT deliverable of a Citizen Science module for Drupal.

Workshop Day 1: What can we learn from successful citizen science projects?

Morning (workshop participants & invited NHM staff)

Presentations from successful citizen science projects (background to the project and what has made them successful)

Afternoon (workshop participants)

Round table discussion on how ViBRANT and Scratchpads can participate in citizen science with emphasis on:
  • What would be useful for us to do and how we might be able to engage with existing projects?
  • What user-groups exist, how are they served by existing projects, and who can Scratchpads/ViBRANT target?
  • What are the outcomes of these projects (fun/educational awareness/scientific data)?
  • What quality of data can be collected?
  • How can data gathered be reused (Biodiversity Data Journal/GBIF/EoL)?

Workshop Day 2: Creating a citizen science plan for Scratchpads & ViBRANT

ViBRANT attendees

  • Development plan for HCMR’s citizen science module and can we incorporate it into the BioBlitz profile
  • Can we incorporate citizen science tools into Scratchpads in general (e.g. crowdsourcing image transcription).

Sunday, 18 November 2012

Playing with Flickr and CartoDB

Last Friday we had a ViBRANT sponsored workshop about CartoDB, the open source mapping and visualisation product from Madrid/New York based Vizzuality. The context of the workshop was possible integration of CartoDB with the Scratchpads and OBOE projects in the context of visualising biological datasets. The notes for the workshop demonstrations are here and are what the work done here is based on.

Not having a suitable dataset to hand I have been playing with making maps of the photos I have shared on Flickr. Flickr does provide a map view of a user's photographs (here's mine) although it is very limited in functionality - and unless you only have a handful of photographs you can't get a map view of all of your photographs.

I have previously visualised my Flickr stream by hacking the Drupal flickrsync module to save geolocation data with the Location module. Even with clustering the map points for 7,000+ images the results are slow to load: Drupal Flickr map of my photographs. The plus side of this work was that with just modifying the output of the view I could get a CSV file of my Flickr stream which I easily imported into CartoDB.

The basic map produced by CartoDB from this file is below:

Next I wanted to make a map of countries that are represented in my Flickr stream (perhaps I really wanted to play with PostGIS and polygons). This required downloading a shape file of all the countries from thematicmapping and uploading the file to a new table in CartoDB (CartoDB will accept the URL to the zip file so you can do it without downloading the file if you choose). The following SQL was applied to the world countries table:

This results in the following map:


Finally using some PostGIS I was able to make this map a little more accurate by splitting the countries into separate polygons (e.g. separating Hawaii from the continental United States, Northern Ireland from Great Britain).


Here's the new map:
 

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